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J. Biochem, 2004, Vol. 135, No. 4 525-532
© 2004 The Japanese Biochemical Society


BIOCHEMISTRY

Mutational Effects on O6-Methylguanine-DNA Methyltransferase from Hyperthermophile: Contribution of Ion-Pair Network to Protein Thermostability

Shingo Nishikori1, Kentaro Shiraki1, Kiyonobu Yokota1, Naoshige Izumikawa1, Shinsuke Fujiwara2, Hiroshi Hashimoto3, Tadayuki Imanaka4 and Masahiro Takagi*,1

1 School of Materials Science, Japan Advanced Institute for Science and Technology, 1-1 Asahidai, Tatsunokuchi, Ishikawa 923-1292; 2 Department of Bioscience, School of Science and Technology, Kwansei-Gakuin University, 2-1 Gakuen Sanda, Hyogo 669-1337; 3 Science of Biological Supermolecular Systems, Graduate School of Integrated Science, Yokohama City University, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045; and 4 Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510

Ion pairs have been considered to be general stabilizing factors in hyperthermophilic proteins, but the present experimental data cannot fully explain how ion pairs and ion-pair networks contribute to the stability. In this paper, we show experimental evidence that not all of the internal ion pairs contribute to the thermal and thermodynamic stability, using O6-methylguanine-DNA methyltransferase from Thermococcus kodakaraensis KOD1 (Tk-MGMT) as a model protein. Of three mutants in which an inter-helical ion pair was disrupted, only one mutant (E93A) was shown to be destabilized. {Delta}G of E93A was lower by ~4 kJ mol–1 than that of the wild type, and E93A unfolded one order of magnitude faster than did the wild type and other variants. Glu 93 has unique properties in forming an ion-pair network that bridges the N- and C-terminal domains and connects three helices in the protein interior.

* To whom correspondence should be addressed. Tel: +81-761-51-1650, Fax: +81-761-51-1655, E-mail: takagi{at}jaist.ac.jp


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S. Nishikori, K. Shiraki, M. Okanojo, T. Imanaka, and M. Takagi
Equilibrium and Kinetic Stability of a Hyperthermophilic Protein, O6-Methylguanine-DNA Methyltransferase under Various Extreme Conditions
J. Biochem., October 1, 2004; 136(4): 503 - 508.
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